wetlab:external:sequencing_embl
Accessing sequencing service at EMBL GeneCore facility
Website
- General website for information: https://www.embl.org/groups/genomics/
- Website for data download: https://faspex.embl.de/aspera/faspex
Create accounts
We already had a group account created with GeneCore
- The group ID for our group is: R4fsRG84i
- Type of our group: EMBL Member State Institution
To use the service, one needs to register an account for oneself, under our group account
- Contact solexateam@embl.de or genecore@embl.de for account registration
Sample submission
- Fill up the sample submission form and send it to GeneCore by email: https://www.embl.org/groups/genomics/wp-content/uploads/2023/06/GeneCoreSampleSubmissionForm2023.xlsx
- Ask GeneCore for the required concentration and volumes for a specific sequencing platform
- Provide the Fragment Analyzer trace profiles of the libraries together with the sample submission form.
- Talk to Julia/Celine to arrange the sample pickup via a bike delivery service (> 24h in advance).
Data download
- Once your data becomes available, you will get notified by email and the data can be downloaded on https://faspex.embl.de/aspera/faspex
- Follow the website instructions for installing Aspera Connect (a browser plugin) for downloading.
- Whether it is possible to directly download the data to sds? Haven't figured it out yet (but looking forward to a update)
Data storage
- Currently sequencing runs from EMBL gene core facility are stored in sds /mnt/sds-hd/sd17d003/GeneCore
/opt/bitnami/dokuwiki/data/pages/wetlab/external/sequencing_embl.txt · Last modified: 2024/04/22 11:08 by xuefeiyuan