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common_protocols:prepare_sequencing

HOW TO SEQUENCE

Guide from finished pool to starting the Gerda

  • Unfreeze the Pool , PhiX ,Flowcell , HT1 and Reagent Cartridge4 (illumina).
  • HT1 and Reagent Cartridge can thawed in water to save some time.
  • Take 2 empty 1,5ml Tubes and dilute NaOH (dilute to 0.2N) and Tris5 (dilute to 200 nM) with UltraPure Water (total 100µl dilution).
  • Take 2 empty 1,5 ml Tubes for Denaturation and final Dilution.
  • Denaturation: mix 5µl the ~ 4nM Pool and 5 µl freshly diluted 0.2N NaOH
  • Vortex briefly and then centrifuge at 280x g for 1 minute
  • incubate at room temperature for 5 minutes
  • add 5 µl Tris-HCl, pH 7
  • Vortex briefly and then centrifuge at 280x g for 1 minute
  • dilute denaturated Pool to 20 pM with prechilled HT1.
  • How much HT1 you need depends on the pool conc. (see in Pooling sheet)

Pool conc.: _

  HT1-Buffer vol.:    _________________
* Vortex briefly and then centrifuge at 280x g for 1 minute
* Place the 20 pM pools on ice until you are ready to proceed to final dilution
/opt/bitnami/dokuwiki/data/pages/common_protocols/prepare_sequencing.txt · Last modified: 2024/09/23 08:13 by celine

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